Package: glmmTMB 1.1.10.9000
glmmTMB: Generalized Linear Mixed Models using Template Model Builder
Fit linear and generalized linear mixed models with various extensions, including zero-inflation. The models are fitted using maximum likelihood estimation via 'TMB' (Template Model Builder). Random effects are assumed to be Gaussian on the scale of the linear predictor and are integrated out using the Laplace approximation. Gradients are calculated using automatic differentiation.
Authors:
glmmTMB_1.1.10.9000.tar.gz
glmmTMB_1.1.10.9000.zip(r-4.5)glmmTMB_1.1.10.9000.zip(r-4.4)glmmTMB_1.1.10.9000.zip(r-4.3)
glmmTMB_1.1.10.9000.tgz(r-4.4-x86_64)glmmTMB_1.1.10.9000.tgz(r-4.4-arm64)glmmTMB_1.1.10.9000.tgz(r-4.3-x86_64)glmmTMB_1.1.10.9000.tgz(r-4.3-arm64)
glmmTMB_1.1.10.9000.tar.gz(r-4.5-noble)glmmTMB_1.1.10.9000.tar.gz(r-4.4-noble)
glmmTMB_1.1.10.9000.tgz(r-4.4-emscripten)glmmTMB_1.1.10.9000.tgz(r-4.3-emscripten)
glmmTMB.pdf |glmmTMB.html✨
glmmTMB/json (API)
NEWS
# Install 'glmmTMB' in R: |
install.packages('glmmTMB', repos = c('https://glmmtmb.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/glmmtmb/glmmtmb/issues
- Owls - Begging by Owl Nestlings
- Salamanders - Repeated counts of salamanders in streams
- epil2 - Seizure Counts for Epileptics - Extended
- spider_long - Spider data from CANOCO, long format
Last updated 23 hours agofrom:70f24c7295. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 05 2024 |
R-4.5-win-x86_64 | OK | Nov 05 2024 |
R-4.5-linux-x86_64 | OK | Nov 05 2024 |
R-4.4-win-x86_64 | OK | Nov 05 2024 |
R-4.4-mac-x86_64 | OK | Nov 05 2024 |
R-4.4-mac-aarch64 | OK | Nov 05 2024 |
R-4.3-win-x86_64 | OK | Nov 05 2024 |
R-4.3-mac-x86_64 | OK | Nov 05 2024 |
R-4.3-mac-aarch64 | OK | Nov 05 2024 |
Exports:bellbeta_familybetabinomialcompoisdiagnosedtruncated_nbinom1dtruncated_nbinom2dtruncated_poissonfamily_paramsfinalizeTMBfitTMBfixefgenpoisget_corgetCapabilitiesgetGrpVargetMEgetReStrucglmmTMBglmmTMBControlgt_loadlognormalnbinom1nbinom12nbinom2numFactoromp_checkordbetaparseNumLevelsput_corranefrefitset_simcodessigmasimulate_newskewnormalt_familytruncated_compoistruncated_genpoistruncated_nbinom1truncated_nbinom2truncated_poissontweedieup2dateVarCorrziGamma
Dependencies:bootlatticelme4MASSMatrixmgcvminqanlmenloptrnumDerivrbibutilsRcppRcppEigenRdpackreformulasTMB
basic examples of glmmTMB usage
Rendered fromglmmTMB.Rnw
usingknitr::knitr
on Nov 05 2024.Last update: 2023-03-15
Started: 2015-12-01
Covariance structures with glmmTMB
Rendered fromcovstruct.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2024-11-05
Started: 2016-12-02
Hacking glmmTMB
Rendered fromhacking.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2023-07-19
Started: 2022-10-24
Miscellaneous examples
Rendered frommiscEx.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2021-01-03
Started: 2017-05-03
Model evaluation
Rendered frommodel_evaluation.Rnw
usingknitr::knitr
on Nov 05 2024.Last update: 2023-04-25
Started: 2019-06-18
Parallel optimization using glmmTMB
Rendered fromparallel.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2022-10-24
Started: 2019-06-18
Post-hoc MCMC with glmmTMB
Rendered frommcmc.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2024-03-17
Started: 2016-10-19
Priors in glmmTMB
Rendered frompriors.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2024-04-05
Started: 2024-03-17
Simulate from a fitted glmmTMB model or a formula
Rendered fromsim.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2024-06-20
Started: 2016-11-22
Troubleshooting with glmmTMB
Rendered fromtroubleshooting.rmd
usingknitr::rmarkdown
on Nov 05 2024.Last update: 2021-09-09
Started: 2017-02-16